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Hi,
very nice work indeed!
can you provide your tensorflow-gpu version? i encounter some problem when I try use bern.
I create a new environment named bern and pip install -r requirements.txt
when i run python3 -u server.py --port 8888 --gnormplus_home ~/bern/GNormPlusJava --gnormplus_port 18895 --tmvar2_home ~/bern/tmVarJava --tmvar2_port 18896
it raise Exception
~/bern » python3 -u server.py --port 8888 --gnormplus_home ~/bern/GNormPlusJava --gnormplus_port 18895 --tmvar2_home ~/bern/tmVarJava --tmvar2_port 18896
2022-09-05 16:32:04.232546: I tensorflow/core/util/util.cc:169] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2022-09-05 16:32:04.237711: W tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libcudart.so.11.0'; dlerror: libcudart.so.11.0: cannot open shared object file: No such file or directory
2022-09-05 16:32:04.237742: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
Traceback (most recent call last):
File "server.py", line 8, in <module>
from biobert_ner.run_ner import BioBERT, FLAGS
File "/data/wenyuhao/bern/biobert_ner/run_ner.py", line 24, in <module>
flags = tf.flags
AttributeError: module 'tensorflow' has no attribute 'flags'
i think it beacuse of the version of tensorflow-gpu mismatched
and i install latest version
tensorboard==2.9.1
tensorboard-data-server==0.6.1
tensorboard-plugin-wit==1.8.1
tensorflow-estimator==2.9.0
tensorflow-gpu==2.9.1
tensorflow-io-gcs-filesystem==0.26.0
~/bern » pip install tensorflow-gpu==1.13
ERROR: Could not find a version that satisfies the requirement tensorflow-gpu==1.13 (from versions: 2.2.0, 2.2.1, 2.2.2, 2.2.3, 2.3.0, 2.3.1, 2.3.2, 2.3.3, 2.3.4, 2.4.0, 2.4.1, 2.4.2, 2.4.3, 2.4.4, 2.5.0, 2.5.1, 2.5.2, 2.5.3, 2.6.0, 2.6.1, 2.6.2, 2.6.3, 2.6.4, 2.6.5, 2.7.0rc0, 2.7.0rc1, 2.7.0, 2.7.1, 2.7.2, 2.7.3, 2.7.4, 2.8.0rc0, 2.8.0rc1, 2.8.0, 2.8.1, 2.8.2, 2.8.3, 2.9.0rc0, 2.9.0rc1, 2.9.0rc2, 2.9.0, 2.9.1, 2.9.2, 2.10.0rc0, 2.10.0rc1, 2.10.0rc2, 2.10.0rc3)
ERROR: No matching distribution found for tensorflow-gpu==1.13
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