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@abdenlab

Abdennur Lab

Lab for Genomic Data Science

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  1. oxbow oxbow Public

    Oxbow makes genomic data ready for high-performance analytics.

    Rust 147 13

  2. tcga-db tcga-db Public

    Local database of TCGA metadata

    Python

  3. jointly-hic jointly-hic Public

    Genomics research toolkit for jointly embedding Hi-C 3D chromatin contact matrices into the same vector space

    Python 8 1

  4. ipylangchat ipylangchat Public

    Simple Jupyter chat UI for LangChain

    Jupyter Notebook 11 2

Repositories

Showing 10 of 20 repositories
  • jointly-hic Public

    Genomics research toolkit for jointly embedding Hi-C 3D chromatin contact matrices into the same vector space

    abdenlab/jointly-hic’s past year of commit activity
    Python 8 GPL-3.0 1 0 0 Updated Dec 29, 2025
  • oxbow Public

    Oxbow makes genomic data ready for high-performance analytics.

    abdenlab/oxbow’s past year of commit activity
    Rust 147 Apache-2.0 13 7 1 Updated Dec 22, 2025
  • giql Public

    SQL dialect for genomic range queries.

    abdenlab/giql’s past year of commit activity
    Python 5 0 0 0 Updated Dec 19, 2025
  • oxbow-lite Public
    abdenlab/oxbow-lite’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 13, 2025
  • tcga-nmf Public

    TCGA ATAC-seq NMF notebook

    abdenlab/tcga-nmf’s past year of commit activity
    Python 1 0 0 0 Updated Jun 18, 2025
  • giql-cicd Public Forked from conradbzura/git-flow

    CI/CD workflows for GIQL

    abdenlab/giql-cicd’s past year of commit activity
    Shell 0 2 0 0 Updated May 1, 2025
  • tcga-db Public

    Local database of TCGA metadata

    abdenlab/tcga-db’s past year of commit activity
    Python 0 0 0 0 Updated Jan 20, 2025
  • datashader Public Forked from holoviz/datashader

    Quickly and accurately render even the largest data.

    abdenlab/datashader’s past year of commit activity
    Python 0 BSD-3-Clause 383 0 0 Updated Jan 6, 2025
  • ldsc-python3 Public Forked from bulik/ldsc

    LD Score Regression (LDSC)

    abdenlab/ldsc-python3’s past year of commit activity
    Python 2 GPL-3.0 372 0 3 Updated Oct 31, 2024
  • snakemake-executor-plugin-lsf Public Forked from BEFH/snakemake-executor-plugin-lsf

    A Snakemake executor plugin for submitting jobs to a LSF cluster

    abdenlab/snakemake-executor-plugin-lsf’s past year of commit activity
    Python 0 MIT 7 0 1 Updated Aug 7, 2024
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